1,133 skills found · Page 34 of 38
jaechang-hits / gtarsRust-backed Python library for fast genomic token arithmetic and BED processing. High-performance BED I/O, interval set ops (intersect, merge, complement, subtract), region tokenization against a universe, universe construction. Use for preprocessing large BED collections and ML token vocabularies.
jaechang-hits / deseq2-differential-expressionBulk RNA-seq DE with R/Bioconductor DESeq2. Negative binomial GLM, empirical Bayes shrinkage, Wald/LRT tests, multi-factor designs, Salmon tximeta import, apeglm LFC shrinkage, MA/volcano/heatmap viz. R gold standard. Use pydeseq2-differential-expression for Python; use edgeR for TMM normalization.
jaechang-hits / gseapy-gene-enrichmentGSEA and over-representation analysis (ORA) for RNA-seq and proteomics. Wraps Enrichr for ORA against MSigDB, KEGG, GO, and 200+ databases; runs preranked GSEA on ranked DE gene lists. Outputs enrichment tables and running-score plots. Use after DESeq2 or edgeR for pathway-level interpretation.
jaechang-hits / pydeseq2-differential-expressionBulk RNA-seq DE with PyDESeq2: load counts, normalize, fit negative binomial models, Wald test (BH-FDR), LFC shrinkage, volcano/MA plots. Use for two-group comparisons, multi-factor designs with batch correction, multiple contrasts.
jaechang-hits / harmony-batch-correctionHarmony batch correction for scRNA-seq and other omics. Removes batch effects from PCA embeddings while preserving biology. Run after PCA, before UMAP. Scales to millions of cells. Python (harmonypy, scanpy) and R (Seurat).
jaechang-hits / pathmlComputational pathology toolkit for whole-slide images (WSIs): load slides, extract tiles, stain normalization, nuclear segmentation, feature extraction, and ML training. Supports H&E and multiplex. For end-to-end pipelines from raw WSIs to quantitative outputs.
jaechang-hits / cancer-research-figure-guideCancer Research (AACR) figures: resolution (300-1200 DPI), formats (EPS/TIFF/AI), hierarchical panel labels (Ai, Aii, Bi), figure/table limits, legend requirements with replicate counts.
jaechang-hits / lancet-figure-guideThe Lancet figure preparation: resolution (300+ DPI at 120%), preferred editable formats (PowerPoint/Word/SVG), column widths (75/154 mm), Times New Roman, in-house redraw policy.
giuseppe-trisciuoglio / aws-lambda-python-integrationProvides AWS Lambda integration patterns for Python with cold start optimization
datadrivenconstruction / as-built-documentationAutomate as-built documentation and digital handover for construction. Compile project records, generate O&M manuals, create asset databases, and ensure complete project closeout.
datadrivenconstruction / bim-visual-programming-automationAutomate BIM workflows using visual programming and Python. Create parametric schedules, export data, batch modify elements, and integrate with external data sources.
datadrivenconstruction / capacity-planningPlan organizational capacity for construction projects. Forecast resource needs, identify capacity gaps, and support strategic planning for project pursuit and staffing.
datadrivenconstruction / change-order-analysisAnalyze and predict construction change orders using ML. Classify change order types, predict costs and schedule impacts, identify patterns, and optimize approval workflows.
datadrivenconstruction / clash-detection-analysisDetect and analyze geometric clashes between BIM elements. Identify hard clashes, soft clashes, and workflow conflicts using spatial analysis and rule-based detection.
datadrivenconstruction / contractor-matching-aiAI-powered contractor matching and selection for construction projects. Analyze contractor capabilities, past performance, certifications, and project requirements to recommend optimal matches.
datadrivenconstruction / defect-detection-aiAI-powered construction defect detection using computer vision. Identify cracks, spalling, corrosion, and other defects in concrete, steel, and building components from images and video.
datadrivenconstruction / digital-twin-syncSynchronize construction digital twins with real-time data. Connect BIM models with IoT sensors, progress updates, and field data for live project visualization and monitoring.
datadrivenconstruction / document-classification-nlpAutomatically classify and extract information from construction documents using NLP. Categorize RFIs, submittals, change orders, specifications, and contracts.
datadrivenconstruction / drone-site-surveyProcess drone survey data for construction sites. Generate orthomosaics, DEMs, point clouds, calculate volumes, track progress, and integrate with BIM models for comparison.
datadrivenconstruction / energy-simulationBuilding energy simulation and analysis for construction. Calculate heating/cooling loads, evaluate envelope performance, optimize HVAC sizing, and ensure energy code compliance.
datadrivenconstruction / enterprise-risk-aggregatorAggregate and analyze risks across construction project portfolio. Identify correlated risks, systemic exposures, and portfolio-level risk mitigation strategies.
datadrivenconstruction / environmental-monitoringMonitor environmental conditions on construction sites. Track air quality, noise levels, vibration, dust, and weather to ensure compliance and worker safety.
datadrivenconstruction / equipment-telematicsIntegrate and analyze telematics data from heavy construction equipment. Track location, utilization, fuel consumption, maintenance needs, and operator behavior.
datadrivenconstruction / ifc-data-extractionExtract structured data from IFC (Industry Foundation Classes) files using IfcOpenShell. Parse BIM models, extract quantities, properties, spatial relationships, and export to various formats.
datadrivenconstruction / labor-productivity-analyticsAnalyze construction labor productivity using data analytics. Track worker performance, identify inefficiencies, predict resource needs, and optimize crew allocation for maximum efficiency.
datadrivenconstruction / material-tracking-iotIoT-based material tracking for construction sites. Monitor material delivery, storage conditions, usage, and inventory with sensors, RFID, GPS, and real-time dashboards.
datadrivenconstruction / open-construction-estimateAccess and utilize open construction pricing databases. Match BIM elements to standardized work items, calculate costs using public unit price databases with 55,000+ work items.
datadrivenconstruction / permit-tracking-automationAutomate construction permit tracking and management. Monitor application status, track renewal deadlines, manage document requirements, and integrate with municipal systems.
datadrivenconstruction / portfolio-dashboardMulti-project portfolio analytics dashboard. Aggregate KPIs across projects, track portfolio health, compare performance, and support executive decision-making.
datadrivenconstruction / prefab-optimizationOptimize prefabrication and modular construction workflows. Plan module sequencing, factory scheduling, transportation logistics, and on-site assembly for maximum efficiency.
