harmony-batch-correction
Harmony batch correction for scRNA-seq and other omics. Removes batch effects from PCA embeddings while preserving biology. Run after PCA, before UMAP. Scales to millions of cells. Python (harmonypy, scanpy) and R (Seurat).
Install / Use
npx skills add jaechang-hits/SciAgent-Skills --skill harmony-batch-correctionInstalls into whichever agent you are using.
SKILL.md
Installable skill definition
Quality Score
Category
AI & Machine LearningSupported Platforms
Our assessment of harmony-batch-correction
harmony-batch-correction scores 83/100 on our quality scale, 678th of 963 AI & Machine Learning skills we index.
We have not analysed the SKILL.md file itself yet, so the content part of this score is an estimate until our crawler reaches it.
It has 367 GitHub stars, a meaningful sign that others use it.
Maintenance, license and trust
- The repository was last updated 37 days ago, so harmony-batch-correction is actively maintained.
- No license is declared. By default that means all rights are reserved: you can read it, but reusing or redistributing it is not clearly permitted. Ask the author before building on it commercially.
- Its trust signals score 88/100, with 1 caution from licensing, adoption, age or documentation. These come from repository metadata, not a code audit — read the skill file before letting an agent act on it.
harmony-batch-correction compared with similar skills
All 4 of these similar skills score higher than harmony-batch-correction; compare them before choosing.
| Skill | Score | Stars | Updated | Format |
|---|---|---|---|---|
| harmony-batch-correction (this skill)by jaechang-hits | 83 | 367 | 37d ago | SKILL.md |
| claude-memby thedotmack | 100 | 96.3k | today | CLAUDE.md |
| Agent-Reachby Panniantong | 100 | 91.2k | 19d ago | CLAUDE.md |
| Understand-Anythingby Egonex-AI | 100 | 85.3k | 3d ago | CLAUDE.md |
| headroomby headroomlabs-ai | 100 | 74.4k | today | CLAUDE.md |
Frequently asked questions
- How do I install harmony-batch-correction?
- Run
npx skills add jaechang-hits/SciAgent-Skills --skill harmony-batch-correction. The install tabs above show the steps for each supported agent. - Which AI agents does harmony-batch-correction work with?
- It is written for Universal, as a SKILL.md file. Other agents that read the same format can often use it too.
- Is harmony-batch-correction safe to use?
- It declares no license and scores 88/100 on trust signals. Skills are instructions an agent will follow, so read the file before installing it and do not approve commands you do not understand.
- Is harmony-batch-correction still maintained?
- The repository was last updated 37 days ago, so harmony-batch-correction is actively maintained.
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Languages
Trust signals
From repository metadata: license, adoption, age and documentation. Not a code audit — see the Safety scan above for what the skill file itself contains.