deseq2-differential-expression
Bulk RNA-seq DE with R/Bioconductor DESeq2. Negative binomial GLM, empirical Bayes shrinkage, Wald/LRT tests, multi-factor designs, Salmon tximeta import, apeglm LFC shrinkage, MA/volcano/heatmap viz. R gold standard. Use pydeseq2-differential-expression for Python; use edgeR for TMM normalization.
Install / Use
npx skills add jaechang-hits/SciAgent-Skills --skill deseq2-differential-expressionInstalls into whichever agent you are using.
SKILL.md
Installable skill definition
Quality Score
Category
Development & EngineeringSupported Platforms
Our assessment of deseq2-differential-expression
deseq2-differential-expression scores 83/100 on our quality scale, 3129th of 4,619 Development & Engineering skills we index.
We have not analysed the SKILL.md file itself yet, so the content part of this score is an estimate until our crawler reaches it.
It has 367 GitHub stars, a meaningful sign that others use it.
Maintenance, license and trust
- The repository was last updated 37 days ago, so deseq2-differential-expression is actively maintained.
- No license is declared. By default that means all rights are reserved: you can read it, but reusing or redistributing it is not clearly permitted. Ask the author before building on it commercially.
- Its trust signals score 88/100, with 1 caution from licensing, adoption, age or documentation. These come from repository metadata, not a code audit — read the skill file before letting an agent act on it.
deseq2-differential-expression compared with similar skills
All 4 of these similar skills score higher than deseq2-differential-expression; compare them before choosing.
| Skill | Score | Stars | Updated | Format |
|---|---|---|---|---|
| deseq2-differential-expression (this skill)by jaechang-hits | 83 | 367 | 37d ago | SKILL.md |
| Agent-Reachby Panniantong | 100 | 91.2k | 19d ago | CLAUDE.md |
| headroomby headroomlabs-ai | 100 | 74.4k | today | CLAUDE.md |
| ai-job-searchby MadsLorentzen | 100 | 45.0k | 1d ago | CLAUDE.md |
| claude-howtoby luongnv89 | 100 | 41.7k | 4d ago | CLAUDE.md |
Frequently asked questions
- How do I install deseq2-differential-expression?
- Run
npx skills add jaechang-hits/SciAgent-Skills --skill deseq2-differential-expression. The install tabs above show the steps for each supported agent. - Which AI agents does deseq2-differential-expression work with?
- It is written for Universal, as a SKILL.md file. Other agents that read the same format can often use it too.
- Is deseq2-differential-expression safe to use?
- It declares no license and scores 88/100 on trust signals. Skills are instructions an agent will follow, so read the file before installing it and do not approve commands you do not understand.
- Is deseq2-differential-expression still maintained?
- The repository was last updated 37 days ago, so deseq2-differential-expression is actively maintained.
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Languages
Trust signals
From repository metadata: license, adoption, age and documentation. Not a code audit — see the Safety scan above for what the skill file itself contains.