62 skills found · Page 1 of 3
COMBINE-lab / Salmon🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
pachterlab / KallistoNear-optimal RNA-Seq quantification
gpertea / StringtieTranscript assembly and quantification for RNA-Seq
deweylab / RSEMRSEM: accurate quantification of gene and isoform expression from RNA-Seq data
GoekeLab / BambuReference-guided transcript discovery and quantification for long read RNA-Seq data
kingsfordgroup / SailfishRapid Mapping-based Isoform Quantification from RNA-Seq Reads
timbitz / Whippet.jlLightweight and Fast; RNA-seq quantification at the event-level
ratschlab / SpladderTool for the detection and quantification of alternative splicing events from RNA-Seq data.
COMBINE-lab / Oarfishlong read RNA-seq quantification
mlbendall / TelescopeQuantification of transposable element expression using RNA-seq
YeoLab / OutriggerCreate a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
markrobinsonuzh / Conquerconsistent quantification of external RNA-seq data sets
nf-core / CircrnacircRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
morrislab / QapaRNA-seq Quantification of Alternative Polyadenylation
epigen / Rnaseq PipelineRNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
plasslab / SCALPELQuantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.
PavlidisLab / Rnaseq PipelineRNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
ruolin / StrawberryA program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
davidaknowles / EagleAn R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq
zzj / RNASkimRNA-Skim: a rapid method for RNA-Seq quantification at transcript level
