81 skills found · Page 1 of 3
freesurfer / FreesurferNeuroimaging analysis and visualization suite
aramis-lab / ClinicaSoftware platform for clinical neuroimaging studies
neurolabusc / Surf IceGLSL surface rendering source code. Compiled versions available from NITRC. Loads 3DS, CTM, DXF, FreeSurfer, GII (GIfTI), GTS, LWO2, MS3D, MZ3, NV (BrainNetViewer), OBJ, OFF, PLY, STL, VTK. Tractography formats include BFloat, PDB, TCK, TRK, and VTK. Also NIfTI format voxelwise images.
Deep-MI / FsqcA set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
Qoala-T / QCQoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
raamana / VisualqcVisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
dfsp-spirit / FsbrainR library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.
NYUMedML / DARTSCode for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation
DiedrichsenLab / Fs LR 32Standard human cortical surface-based template for neuroimaging analyses (Freesurfer, left-right-symmetric, ~32k vertices) v
bids-apps / FreesurferBIDS app wrapping recon-all from FreeSurfer
etw11 / DunedinPACNICode to estimate DunedinPACNI scores from FreeSurfer parcellations of brain MRI data.
raamana / GraynetSubject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)
ahheckel / FSL ScriptsScript-framework using FSL, Freesurfer and AFNI functionality for automatization and high-throughput processing of MRI data in clustered environments.
srikash / PresurferScripts to prepare MP2RAGE for Freesurfer
KUL-Radneuron / KUL VBGA workflow to allow Freesurfer recon-all to run on brain image with gliomas
neurolabusc / MRIcromacOS Xcode GLSL Volume Render for NIfTI, Bio-Rad Pic, NRRD, Philips, ITK MetaImage, AFNI, Freesurfer, DICOM images.
miykael / Parcellation FragmenterFragments FreeSurfer parcellation annotation in N-equal sized parcels
gallantlab / Autoflattenautomatically create cortical flatmaps from FreeSurfer surfaces
npnl / PALSPipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs
ENIGMA-git / ENIGMA FreeSurfer ProtocolThese protocols are for the analysis of subcortical volume, and cortical thickness and surface area data within FreeSurfer ROI's for ENIGMA working groups.
