Claude Configs
CLAUDE.md project files and Claude Code slash commands
Showing 121–180 of 12,591 skills · Page 3 of 210
K-Dense-AI / peer-review
46.4kPrepares evidence-bounded, constructive peer-review drafts and structured manuscript assessments. Supports authorized review of scientific manuscripts, protocols, preprints, or research proposals; reporting-guideline selection; claim–evidence checks; methods, statistics, reproducibility, ethics, fig…
K-Dense-AI / phylogenetics
46.4kBuilds and analyzes phylogenetic trees using MAFFT multiple sequence alignment, IQ-TREE maximum likelihood with ModelFinder and branch support, and FastTree approximate inference. Uses ETE3 for tree summaries and visualization.
K-Dense-AI / pkpd-modeling
46.4kPharmacokinetic and pharmacodynamic modelling and simulation - non-compartmental analysis, compartmental and population PK, PK/PD and exposure-response, TMDD, PBPK orientation, bioequivalence, allometric scaling and first-in-human dose, drug interaction prediction, and Bayesian therapeutic drug moni…
K-Dense-AI / polars-bio
46.4kPerforms genomic interval overlap, nearest, merge, coverage, complement and subtraction on Polars DataFrames, and reads or writes BED, VCF, BCF, BAM, CRAM, GFF, GTF, FASTA and FASTQ data.
K-Dense-AI / primer-design
46.4kDesigns and audits PCR and RT-qPCR primers with Primer3, explicit thermodynamic conditions, reference-based off-target amplification searches, and traceable sequence coordinates.
K-Dense-AI / pufferlib
46.4kVersion-aware guidance for PufferLib reinforcement-learning environments, vectorization, policies, PuffeRL training, evaluation, and safe checkpoint review. Covers the native 5.0 build and environment API, published 3.0.0 Gymnasium/PettingZoo adaptation, and a pinned historical 4.0 profile.
K-Dense-AI / pydeseq2
46.4kPerforms bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR correction, coefficient-matched LFC shrinkage, and result visualization. Use for PyDESeq2 or Python DESeq2 workflows with biological replicates.
K-Dense-AI / pydicom
46.4kReads, inspects, writes, transforms, and preflights local DICOM datasets and pixel data. Applies to DICOM metadata, transfer syntaxes, compression plugins, frames, private elements, JSON, and bounded de-identification review.
K-Dense-AI / pymatgen
46.4kAnalyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen. Use for local phase diagrams, symmetry sensitivity, electronic-structure I/O, and bounded Materials Project queries.
K-Dense-AI / pysam
46.4kProvides Python/HTSlib workflows for genomic files. Used when reading, querying, filtering, or writing SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ, or tabix data with pysam, including pileup, coverage, indexing, and CRAM references.
K-Dense-AI / pytdc
46.4kProvides Therapeutics Data Commons workflows through PyTDC for registry discovery, dataset access, task-aware splits, evaluator metrics, benchmark groups, and bounded molecular-oracle scoring
K-Dense-AI / qutip
46.4kSimulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space workflows. Use for local quantum-dynamics work where physical assumptions, dimensions, and numerical convergence must be explicit.
K-Dense-AI / relsa-severity-assessment
46.4kSupports multivariate severity assessment and exploratory endpoint-time score forecasting for laboratory animal studies using the RELSA (RELative Severity Assessment) score and ARIMA-based foRcast forecasting
K-Dense-AI / scanpy
46.4kPerforms Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or SingleCellExperiment RDS conversion to h5ad.
K-Dense-AI / scientific-brainstorming
46.4kFacilitates evidence-aware scientific ideation with independent generation, structured discussion, explicit assumptions, transparent evaluation, adversarial review, and decision logs.
K-Dense-AI / scientific-visualization
46.4kCreates and audits truthful, accessible, publication-ready scientific figures with Matplotlib, Seaborn, or Plotly. Use it for figure design, multi-panel layouts, uncertainty and missing-data displays, color/contrast review, image metadata validation, and journal export planning.
K-Dense-AI / scientific-writing
46.4kDrafts, revises, and audits scientific manuscripts or reports with explicit evidence provenance, reporting-guideline coverage, authorship accountability, confidentiality controls, and local consistency checks.
K-Dense-AI / scikit-bio
46.4kBiological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
K-Dense-AI / scikit-survival
46.4kBuilds, evaluates, and audits right-censored or competing-risk survival workflows with scikit-survival, including leakage-safe preprocessing, model selection, probability prediction, and censoring-aware metrics.
K-Dense-AI / shap
46.4kExplain and audit machine-learning predictions with SHAP. Use for selecting SHAP explainers and maskers, computing and validating feature attributions, handling multi-output explanations, and producing local or global SHAP visualizations.
K-Dense-AI / simpy
46.4kBuilds, inspects, tests, and analyzes bounded process-based discrete-event simulations with SimPy. Use for event scheduling, resource queues, interrupts, monitoring, independent replications, warm-up, and reproducible output analysis.
K-Dense-AI / statistical-analysis
46.4kGuided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted reporting
K-Dense-AI / statistical-power
46.4kCalculates sample sizes and statistical power for study planning. Applies when someone asks "how many subjects/samples/replicates do I need", wants an a priori power analysis, a minimum detectable effect (MDE), a power curve, or needs to justify a sample size for a grant, IRB protocol, or pre-regist…
K-Dense-AI / tiledbvcf
46.4kStores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample queries, streaming results, allele statistics, QC, and VCF/BCF export locally or through TileDB Cloud.
K-Dense-AI / timesfm-forecasting
46.4kPerforms zero-shot time-series forecasting with Google's TimesFM, including regular-grid CSV preparation, quantile forecasts, XReg covariates, and held-out evaluation.
Yuan1z0825 / nature-downloader
44.3kUse when a user needs lawful academic full text, CNKI institutional access, English OA retrieval, publisher API access, institutional browser fallback, or supporting information downloads.
vercel-labs / core
43.1kCore agent-browser usage guide. Read this before running any agent-browser commands. Covers the snapshot-and-ref workflow, navigating pages, interacting with elements (click, fill, type, select), extracting text and data, taking screenshots, managing tabs, handling forms and auth, waiting for conten…
emilkowalski / animation-performance
40.8kKeep web animations inside the frame budget — animate composite-only properties, keep motion off the main thread when the page is busy, and find the cause when an animation drops frames.
emilkowalski / animation-vocabulary
40.8kReverse-lookup glossary that turns a vague description of a web animation or motion effect into its exact term ("the bouncy thing when a popover opens" → Pop in; "the iOS rubber-band scroll" → Rubber-banding)
emilkowalski / mobile-native
40.8kMake a web app feel native on a phone — the small CSS and meta-tag fixes that separate "a website in a browser" from something that feels installed.
github / ad-campaign-analyzer
39.3kUse this skill when the user shares ad campaign performance data and asks what to cut, scale, or test. Trigger for prompts like "analyze my ad campaigns", "where am I wasting ad spend", "reallocate my ad budget", "which ads are actually working", or "ROAS analysis".
github / agent-governance
39.3kPatterns and techniques for adding governance, safety, and trust controls to AI agent systems. Use this skill when: - Building AI agents that call external tools (APIs, databases, file systems) - Implementing policy-based access controls for agent tool usage - Adding semantic intent classification t…
github / arize-dataset
39.3kCreates, manages, and queries Arize datasets and examples. Covers dataset CRUD, appending examples, exporting data, and file-based dataset creation using the ax CLI
github / arize-evaluator
39.3kHandles LLM-as-judge evaluation workflows on Arize including creating/updating evaluators, running evaluations on spans or experiments, managing tasks, trigger-run operations, column mapping, and continuous monitoring
github / arize-experiment
39.3kCreates, runs, and analyzes Arize experiments for evaluating and comparing model performance. Covers experiment CRUD, exporting runs, comparing results, and evaluation workflows using the ax CLI
github / arize-prompt-optimization
39.3kOptimizes, improves, and debugs LLM prompts using production trace data, evaluations, and annotations. Extracts prompts from spans, gathers performance signal, and runs a data-driven optimization loop using the ax CLI
github / arize-trace
39.3kDownloads, exports, and inspects existing Arize traces and spans to understand what an LLM app is doing or debug runtime issues. Covers exporting traces by ID, spans by ID, sessions by ID, and root-cause investigation using the ax CLI
github / automate-this
39.3kAnalyze a screen recording of a manual process and produce targeted, working automation scripts. Extracts frames and audio narration from video files, reconstructs the step-by-step workflow, and proposes automation at multiple complexity levels using tools already installed on the user machine.
github / aws-resource-query
39.3kQuery AWS resources using natural language. Covers EC2, S3, RDS, Lambda, ECS, EKS, Secrets Manager, IAM, VPC, networking, messaging, and more. Strictly read-only — no writes, deletes, or mutations.
github / breakdown-plan
39.3kIssue Planning and Automation prompt that generates comprehensive project plans with Epic > Feature > Story/Enabler > Test hierarchy, dependencies, priorities, and automated tracking.
github / code-tour
39.3kUse this skill to create CodeTour .tour files — persona-targeted, step-by-step walkthroughs that link to real files and line numbers.
github / codeql
39.3kComprehensive guide for setting up and configuring CodeQL code scanning via GitHub Actions workflows and the CodeQL CLI. This skill should be used when users need help with code scanning configuration, CodeQL workflow files, CodeQL CLI commands, SARIF output, security analysis setup, or troubleshoot…
github / competitor-ad-intelligence
39.3kUse this skill when the user asks to analyze, tear down, or reverse-engineer a competitor''s paid ads. Trigger for prompts like "what ads is [competitor] running", "tear down their ad strategy", "competitor ad analysis", "find ad angles we haven''t tried", or "reverse-engineer their paid funnel".
github / copilot-cli-quickstart
39.3kUse this skill when someone wants to learn GitHub Copilot CLI from scratch. Offers interactive step-by-step tutorials with separate Developer and Non-Developer tracks, plus on-demand Q&A. Just say "start tutorial" or ask a question!
github / dependabot
39.3kComprehensive guide for configuring and managing GitHub Dependabot. Use this skill when users ask about creating or optimizing dependabot.yml files, managing Dependabot pull requests, configuring dependency update strategies, setting up grouped updates, monorepo patterns, multi-ecosystem groups, sec…
github / draw-io-diagram-generator
39.3kUse when creating, editing, or generating draw.io diagram files (.drawio, .drawio.svg, .drawio.png). Covers mxGraph XML authoring, shape libraries, style strings, flowcharts, system architecture, sequence diagrams, ER diagrams, UML class diagrams, network topology, layout strategy, the hediet.vscode…
github / flowstudio-power-automate-build
39.3kBuild, scaffold, and deploy Power Automate cloud flows using the FlowStudio MCP server. Your agent constructs flow definitions, wires connections, deploys, and tests — all via MCP without opening the portal.
github / flowstudio-power-automate-debug
39.3kDebug failing Power Automate cloud flows using the FlowStudio MCP server. The Graph API only shows top-level status codes. This skill gives your agent action-level inputs and outputs to find the actual root cause.
github / flowstudio-power-automate-governance
39.3kGovern Power Automate flows and Power Apps at scale using the FlowStudio MCP cached store. Classify flows by business impact, detect orphaned resources, audit connector usage, enforce compliance standards, manage notification rules, and compute governance scores — all without Dataverse or the CoE St…
github / flowstudio-power-automate-mcp
39.3kFoundation skill for Power Automate via FlowStudio MCP — auth setup, the reusable MCP helper (Python + Node.js), tool discovery via `list_skills` / `tool_search`, and oversized-response handling. Load this skill first when connecting an agent to Power Automate.
github / flowstudio-power-automate-monitoring
39.3kPro+ subscription required. Tenant-wide Power Automate monitoring using the FlowStudio MCP cached store: failure rates, run-health trends, maker/app inventory, inactive owners, and compliance/health reports. Use only for aggregated tenant views.
github / github-release
39.3kGuides IA through releasing a new version of a GitHub library end-to-end. Handles SemVer versioning and Keep a Changelog formatting automatically.
mukul975 / Anthropic-Cybersecurity-Skills
34.9k817 structured cybersecurity skills for AI agents · Mapped to 6 frameworks: MITRE ATT&CK, NIST CSF 2.0, MITRE ATLAS, D3FEND, NIST AI RMF & MITRE F3 (Fight Fraud) · agentskills.io standard · Works with Claude Code, GitHub Copilot, Codex CLI, Cursor, Gemini CLI & 20+ platforms · 29 security domains ·…
nanocoai / nanoclaw
31.0kA lightweight alternative to OpenClaw that runs in containers for security. Connects to WhatsApp, Telegram, Slack, Discord, Gmail and other messaging apps,, has memory, scheduled jobs, and runs directly on Anthropic's Agents SDK
alirezarezvani / claude-skills
28.6k380 Claude Code skills & agent skills & plugins (30+ Agents, 70+ custom commands, 380+ skills, customizable references, scripts)for Claude Code, Codex, Gemini CLI, Cursor, and 8 more coding agents — engineering, marketing, product, compliance, C-level advisory, research, business operations, commerc…
op7418 / guizang-ppt-skill
28.5kAI-agent Skill for generating polished HTML slide decks: editorial magazine and Swiss layouts, image prompts, social covers, and a WebGL/low-power presentation runtime.
manaflow-ai / cmux
28.4kOpen source Ghostty-based macOS terminal with vertical tabs and notifications for AI coding agents. Built for multitasking, organization, and programmability.
Donchitos / Claude-Code-Game-Studios
27.3kTurn Claude Code into a full game dev studio — 49 AI agents, 72 workflow skills, and a complete coordination system mirroring real studio hierarchy.
alchaincyf / huashu-design
25.9kHuashu Design 3.0 · 在 agent 里打一句话，拿回能交付的设计：网页 / App 原型 / 可编辑 PPTX / 动画 / 信息图 · 六个候选挑三个方向 · 84 种带样张的风格库 · 越用越懂你的外观账本与设计体检 · HTML-native design skill for Claude Code, Codex, Cursor & any agent
winfunc / opcode
22.4kA powerful GUI app and Toolkit for Claude Code - Create custom agents, manage interactive Claude Code sessions, run secure background agents, and more.