13 skills found
zhangrengang / SubPhaserTo phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
amsession / Kmer Based Subgenome MappingNo description available
zhangrengang / Subgenome Phasing ExampleAn Example of Subgenome Phasing for Complex Allopolyploidy
eead-csic-compbio / AllopolyploidsPhyloSD: Phylogenomic Subgenome Detection pipeline
HaominLyu / SSMSerial of Similarity Matrix for subgenome partition
wf8 / HomologizerHomologizer: phasing gene copies into polyploid subgenomes
yuanw-18 / Allo4DThis pipeline is used to distinguish allotetraploid subgenomes.
mrmckain / PhyDSPhylogenetic iDentification of Subgenomes
evodify / Phasing GenomesPipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.
niederhuth / Replaying The Evolutionary Tape To Investigate Subgenome DominanceDNA methylation scripts for the paper: Replaying the evolutionary tape to investigate subgenome dominance in allopolyploid Brassica napus
lvyunyunSCI / Div M3Subgenome Dividing Tools
fachrulm / GenomeComparerFor comparing the subgenomes of wheat
jlevy44 / PolyCRACKER Unofficial MirrorA robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5828-5
