GenomeComparer
For comparing the subgenomes of wheat
Install / Use
/learn @fachrulm/GenomeComparerREADME
GenomeComparer
This tool was designed to compare the subgenomes of the hexaploid wheat in terms of the gene structure; in other words, it performs a six-way comparison based on pairwise comparisons between the three subgenomes and reports which genes are conserved between the three.
The main Python-based parsing script (main.py) was mainly built based on Pandas and argparse. The overall pipeline (Pipeline.py) was built using SnakeMake, and utilized samtools, GMAP, Cufflinks, and Mikado.
Only Pipeline.py and main.py are necessary, tests.py was created for testing main.py.
To use the pipeline: snakemake -s Pipeline.py, given that both Pipeline.py and main.py are in the same directory.
Related Skills
node-connect
352.2kDiagnose OpenClaw node connection and pairing failures for Android, iOS, and macOS companion apps
claude-opus-4-5-migration
111.1kMigrate prompts and code from Claude Sonnet 4.0, Sonnet 4.5, or Opus 4.1 to Opus 4.5
frontend-design
111.1kCreate distinctive, production-grade frontend interfaces with high design quality. Use this skill when the user asks to build web components, pages, or applications. Generates creative, polished code that avoids generic AI aesthetics.
model-usage
352.2kUse CodexBar CLI local cost usage to summarize per-model usage for Codex or Claude, including the current (most recent) model or a full model breakdown. Trigger when asked for model-level usage/cost data from codexbar, or when you need a scriptable per-model summary from codexbar cost JSON.
