72 skills found · Page 1 of 3
biojava / Biojava:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
rcedgar / MuscleMultiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
steineggerlab / FoldmasonMultiple Protein Structure Alignment at Scale with FoldMason
End2End-Diffusion / IREPA[ICLR 2026] Official implementation for What matters for Representation Alignment: Global Information or Spatial Structure?
pylelab / USalignUniversal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
EddyRivasLab / InfernalRNA secondary structure/sequence profiles for homology search and alignment
NethermindEth / PaprikaA custom storage engine of Nethermind, benefiting from the alignment of the underlying data structure with the layout of State & Storage trees of Ethereum.
IRMVLab / DVLO[ECCV 2024 Oral] DVLO: Deep Visual-LiDAR Odometry with Local-to-Global Feature Fusion and Bi-Directional Structure Alignment
rupakvignesh / Lyrics To Audio AlignmentAligns text (lyrics) with monophonic singing voice (audio). The algorithm uses structural segmentation to segment the audio into structures and then uses hidden markov models to obtain alignment within segments. The final alignment is concatenation of time stamps of lyrics within the segments for each song.
BGI-SynBio / PyMOL PUBRapid generation of high-quality structure figures for publication with PyMOL-PUB
pymodproject / PymodPyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
rcedgar / ReseekProtein structure alignment and search algorithm
HewlettPackard / StructexGo structure annotations that supports encoding and decoding; similar to C-style bitfields. Supports bitfield packing, self-describing layout parameters, and alignment.
minmarg / Gtalign AlphaGTalign, high-performance protein structure alignment, superposition and search
yulewang97 / ERDiff[NeurIPS 2023 Spotlight] Official Repo for "Extraction and Recovery of Dpatio-temporal Structure in Latent Dynamics Alignment with Diffusion Models"
seagatesoft / SdeStructured Data Extractor. An application to extract structured data from web pages. It uses Data Extraction Based on Partial Tree Alignment (DEPTA) method. (UPDATE: I implemented a newer algorithm: https://github.com/seagatesoft/webdext)
GuillaumeHolley / BloomFilterTrieAn alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.
cyb3rint3l-labs / ServerSecurityAuditPowerShell-based Windows Server Security Audit Engine by Cyb3rint3l Labs. Measures alignment with the NIS2 directive and maps findings to MITRE ATT&CK tactics & CIS Controls v8 practices. Generates interactive HTML dashboards & structured JSON datasets.
TurtleTools / GeometricusA structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
ShadowHackrs / Prompt Generatingis an elite, highly advanced command-line framework designed for generating complex prompt structures. It is built to push the boundaries of AI models by testing their alignment, safety filters, and operational limits. By utilizing state-of-the-art obfuscation techniques, multi-layered theoretical bypass architectures, and linguistic fusion
