105 skills found · Page 1 of 4
fritzsedlazeck / SnifflesStructural variation caller using third generation sequencing
Illumina / MantaStructural variant and indel caller for mapped sequencing data
fritzsedlazeck / SURVIVORToolset for SV simulation, comparison and filtering
philres / NgmlrNGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
lgmgeo / AnnotSVAnnotation and Ranking of Structural Variation
tjiangHIT / CuteSVLong read based human genomic structural variation detection with cuteSV
walaj / SvabaStructural variation and indel detection by local assembly
broadinstitute / Gatk SvA structural variation pipeline for short-read sequencing
baoxingsong / AnchorWaveSensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
epam / NGBNew Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
starskyzheng / PanpopApplication of pan-genome for population
nanoporetech / Pipeline Structural VariationPipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
nhansen / SVanalyzerTools for the analysis of structural variation in genomes
SAMtoBAM / MUMandCoMUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
KCCG / ClinSVRobust detection of clinically relevant structural and copy number variation from whole genome sequencing data
hms-dbmi / ChromoscopeInteractive multiscale visualization for structural variation in human genomes
HongboDoll / TomatoSuperPanGenomeHere, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and constructed a pan-genome, revealing phylogenetic relationships and structural variation among Lycopersicon
micahvista / VACmapVACmap: a long-read aligner specifically designed for complex structural variation discovery
XiaoTaoWang / EagleCA deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps
dantaki / SV2Support Vector Structural Variation Genotyper
