71 skills found · Page 1 of 3
saghen / FrizbeeFast typo-resistant fuzzy matching via SIMD smith waterman, similar algorithm to FZF/FZY
adrg / StrutilGo metrics for calculating string similarity and other string utility functions
mengyao / Complete Striped Smith Waterman LibraryNo description available
alevchuk / Pairwise Alignment In PythonPairwise string alignment in Python (Needleman-Wunsch and Smith-Waterman algorithms)
noporpoise / Seq AlignFast, portable C implementations of Needleman-Wunsch and Smith-Waterman sequence alignment
mbreese / SwalignSmith-Waterman local aligner
torognes / SwipeSmith-Waterman database searches with inter-sequence SIMD parallelisation
CMU-SAFARI / SneakySnakeSneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
scastlara / MinineedleNeedleman-Wunsch and Smith-Waterman algorithms in python
asbschmidt / CUDASW4CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search
Martinsos / OpalSIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
vishnubob / SswPython interface for SIMD Smith-Waterman Library
fjebaker / Fuzzig(Moved to Codeberg) Fuzzy finder algorithms a la Smith-Waterman for Zig.
edanssandes / MASA CUDAlignThe MASA-CUDAlign extension is used with the MASA architecture to align DNA sequences of unrestricted size with the Smith-Waterman/Needleman-Wunsch algorithm combined with Myers-Miller. It uses the NVIDIA CUDA GPU platform for accelerating the computation time.
jasonlin316 / Systolic Array For Smith WatermanThis work implements a dynamic programming algorithm for performing local sequence alignment. Through parallelism, it can run 136X times faster than a software running the same algorithm.
lorenzocestaro / SeqalignCollection of sequence alignment algorithms.
kyu999 / Ssw AlignerPython implementation of Striped Smith-Waterman Algorithm
Edgaras0x4E / StrSimCollection of string similarity and distance algorithms in PHP including Levenshtein, Damerau-Levenshtein, Jaro-Winkler, and more
eriksjolund / DiagonalswC/C++ implementation of the Smith-Waterman algorithm by using SIMD operations (e.g SSE4.1)
regexident / Rust SealRust implementation of Needleman-Wunsch & Smith-Waterman sequence alignment
