14 skills found
arpcard / RgiResistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
tseemann / Nullarbor:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
will-rowe / GrootA resistome profiler for Graphing Resistance Out Of meTagenomes
Microbial-Ecology-Group / AMRplusplusAMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
GunzIvan28 / RMAPBacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS
cdeanj / ResistomeanalyzerNo description available
GaoyangLuo / CompRankingMetagenomic resistome risk ranking pipeline. It can comprehensively ranking the antimicrobial resistance risk of environmental metagenomic samples, also known as CompRanking.
lgpdevtools / SraXSystematic resistome analysis
karla-vasco / Metagenomic ResistomeThis repository contains all the scripts used for metagenomic processing and resistome. First, metagenome sequences from cattle feces were analyzed with AmrPlusPlus for sequence processing and ARG annotations with the MEGARES 2.0 database. Then, host-removed metagenomes were used for DNA assembly and further annotations with DeepARG, CARD, and HMD-ARG which are protein databases to identify antimicrobial determinants. Finally, ARG-host identification was carried out by identifying taxa associated with ARG-carrying contigs and co-occurrence networks between bacterial taxa and ARGs. Statistical analyses were used to identify assembler performance and resistome composition.
icaromsc / WGCAJAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes
BioRRW / Reads2ResistomeHybrid and non-hybrid whole genome assembler with resistome identification for Illumina, PacBio and Nanopore reads.
kyarygin / ResistoMapResistoMap—online visualization of human gut microbiota antibiotic resistome
will-rowe / DraxA pipeline for Detecting Resistome Associated taXa
anotherXinzhu / MiningResistomeThis repo contains r codes for the figures in manuscript of mining resistome.
