135 skills found · Page 1 of 5
JARVIS-Xs / SE AgentSE-Agent is a self-evolution framework for LLM Code agents. It enables trajectory-level evolution to exchange information across reasoning paths via Revision, Recombination, and Refinement, expanding the search space and escaping local optima. On SWE-bench Verified, it achieves SOTA performance
pydna-group / PydnaClone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
tskit-dev / TskitPopulation-scale Ancestral Recombination Graph (ARG) library
marbl / ParsnpParsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
xavierdidelot / ClonalFrameMLClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
gary23ai / APR[ICCV 2021] Amplitude-Phase Recombination: Rethinking Robustness of Convolutional Neural Networks in Frequency Domain
auton1 / LDhatEstimate recombination rates from population genetic data
kr-colab / ReLERNNRecombination Landscape Estimation using Recurrent Neural Networks
rrwick / VerticallRecombination-free trees
vinuesa / Get PhylomarkersA pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
mdrasmus / ArgweaverSampling and manipulating genome-wide ancestral recombination graphs (ARGs)
popgenmethods / PyrhoFast inference of fine-scale recombination rates based on fused-LASSO
popgenmethods / SINGERSampling and inference of genealogies with recombination
qmarcou / IGoRIGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
mturiansky / NonradImplementation for computing nonradiative recombination rates in semiconductors
kr-colab / Discoaldiscoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples
PhHermann / LDJumpR Package to Estimate Variable Recombination Rates using Population Genetic Data
nnaisense / Conditional Style TransferTwo-Stage Peer-Regularized Feature Recombination for Arbitrary Image Style Transfer
kussell-lab / McorrInferring bacterial recombination rates from large-scale sequencing datasets.
AlgoLab / RecGraphOptimal sequence-to-graph alignment with recombinations
