45 skills found · Page 1 of 2
mat10d / EvolveProThis is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
brianhie / Efficient EvolutionEfficient evolution from protein language models
ai4protein / ProSST🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)
xuwd11 / Coursera BioinformaticsMy solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Finding Mutations in DNA and Proteins; Bioinformatics Capstone: Big Data in Biology)
NatLabRockies / EvoProtGradDirected evolution of proteins in sequence space with gradients
diegozea / MIToS.jlA Julia package to analyze protein sequences, structures, and evolutionary information
jsunn-y / ALDEActive Learning-Assisted Directed Evolution for Protein Engineering
elttaes / Revisiting PLMsExploring Evolution-aware & free protein language models as protein function predictors
HySonLab / Directed EvolutionProtein Design by Machine Learning guided Directed Evolution
kfuku52 / CsubstAnalyzing combinations of codon substitution histories
HySonLab / LatentDELatentDE: Latent-based Directed Evolution for Protein Sequence Design
BrooksResearchGroup-UM / PEVAE PaperDeciphering protein evolution and fitness landscapes with latent space models
sokrypton / GREMLINGREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.
eugene / Prot Bo 0:pill: Guiding directed protein evolution with Bayesian Optimization - First Steps :pill:
wilkelab / ProteinEvolutionToolboxNo description available
jbloomlab / Phydmsphylogenetic analyses informed by deep mutational scanning data
zjlab-BioGene / AMP SEMinerAntimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification of antimicrobial peptides (AMPs) as small open reading frames (smORFs) and protein fragments.
PhyloSofS-Team / ThoraxeUse Thor's Axe to cut exons into their evolutionary building blocks :zap:
pemami4911 / PpdeOfficial repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"
libai1943 / Protein Structure Optimization Via MetaheuristicsA balance-evolution artificial bee colony algorithm for protein structure optimization based on a three-dimensional AB off-lattice model
