14 skills found
moiexpositoalonsolab / GrenepipeA flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
lczech / GenesisA library for working with phylogenetic and population genetic data.
nf-core / CrisprseqA pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
lczech / GrenedalfToolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
JialiUMassWengLab / TEMPTEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data
SexGenomicsToolkit / PSASSPooled Sequencing Analysis for Sex Signal
matted-zz / MultipoolHigh-resolution genetic mapping for pooled sequencing.
nkschaefer / CellbouncerTools for pooled single cell sequencing experiments: demultiplex cells, infer doublet rate, assign treatments/sgRNAs, infer ambient RNA from allele matching
capoony / PoolSNPHeuristic SNP caller for pooled sequencing data
MartaPelizzola / ACERAdapted chi-squared and CMH test to evolve and resequenced data. Includes drift and pool sequencing variance in the tests
rnabioco / Scrna SubsetsRecovery of transcriptome subsets from pooled single cell RNA sequencing libraries
biotangweiqi / PQHEPooled QTL Heritability Estimator (PQHE) is a method to estimate QTL heritability using pooled sequencing data obtained under different experimental designs.
aflevel / GWAlphaGenome-wide estimate of genetic effects from pool sequencing data
jeffersonfparil / PoolgenQuantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
