21 skills found
SunPengChuan / WgdiWGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
arzwa / WgdPython package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche-psb/wgd.
zhangrengang / SOIRobust identification of orthologous Synteny with the Orthology Index
mmollina / MAPpolyGenetic maps in autopolyploids
baozg / Potato C88Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
PlantandFoodResearch / MCHapPolyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
mgaynor1 / NQuackAn R package for predicting ploidal level from sequence data using site-based heterozygosity
gwct / GrampaGene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
arzwa / Whale.jlBayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
almeidasilvaf / HybridExpressAn R package for comparative transcriptomic analyses of hybrids and their progenitors
zhangrengang / Subgenome Phasing ExampleAn Example of Subgenome Phasing for Complex Allopolyploidy
hannesbecher / Shiny K MersTetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
lauzingaretti / PSBVBManual
gconant0 / POInTSource code for the Polyploidy Orthology Inference Tool
w-korani / SNP MLSNP-ML is A machine learning dependent tool for SNP calling in polyploidy organisms
Glfrey / Hijacking SourmashScripts, information and data for publication in APPS.
plantarum / FlowPloidyAn R package for flow cytometry histogram analysis
almeidasilvaf / DoubletroubledbA dashboard to explore and download the duplicated gene repertoire in eukaryote species
Ting-Shen / AlliumPolyploidyNo description available
mgaynor1 / AutoPopR-based autopolyploid population and population genetic simulation
