38 skills found · Page 1 of 2
nf-core / ChipseqChIP-seq peak-calling, QC and differential analysis pipeline.
nf-core / AtacseqATAC-seq peak-calling and QC analysis pipeline
nf-core / CutandrunAnalysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
YaqiangCao / CLoops2Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
shawnzhangyx / PePra peak-calling and differential analysis tool for replicated ChIP-Seq data
ZW-xjtlu / ExomePeak2Peak calling and differential methylation for MeRIP-Seq
snakemake-workflows / ChipseqChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).
nf-core / ClipseqCLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
odb9402 / CNNPeaksThe ChIP-Seq peak calling algorithm using convolution neural networks
tbischler / PEAKachuPeak calling tool for CLIP-seq data
deWitLab / PeakCPeak calling for 4C data
KlugerLab / RitornelloRitornello is a high fidelity control free ChIP-seq peak calling algorithm
YeoLab / FLARERNA edit detection (SAILOR) and peak calling (FLARE)
tengmx / GcapcChIP-seq peak calling with GC effects adjustment
mhammell-laboratory / TEpeaksPackage for including repetitive regions in peak calling from ChIP-seq datasets
mforde84 / ENCODE TF ChIP Pipelineminimal pipeline for SPP and MACS2 peak calling plus secondary IDR analysis
nolan-h-hamilton / ROCCORobust Open Chromatin Detection via Convex Optimization: Multisample Consensus Peak Calling
shenlab-sinai / Pipelines For ChIP Seq AnalysisPipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.
tdhock / PeakSegPipelineSupervised machine learning pipeline for peak calling in ChIP-seq data
Tuteja-Lab / UnsupervisedPeakCallerPeak calling for ATAC-seq data using contrastive learning on biological replicates
