peakC

Methods for studying the spatial organization of the genome, such as 4C or Capture-C, have become more common. Here we provide an R package that enables non-parametric peak calling for one-vs-all 'C' methods called peakC.

Getting Started

These instructions will allow you to install peakC on your local machine.

Prerequisites

You need The following software and packages to install and run peakC:

R (any recent version)
isotone package (from CRAN)
devtools (for installation from github, not required for running the package)

Installing

By far the easiest is to install peakC directly from GitHub. The following command will enable installation using devtools.

library(devtools)
install_github("deWitLab/peakC")