76 skills found · Page 1 of 3
ieee820 / BraTS2018 Tumor SegmentationWe provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.
pykao / BraTS2018 Tumor SegmentationWe provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D UNet by adding additional brain parcellation with original MR images.
connectomicslab / Connectomemapper3Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
frantisekvasa / Rotate ParcellationCode (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.
ccraddock / Cluster RoiPython script to perform the spatially constrained parcellation of functional MRI data as described in Craddock et al., Human Brain Mapp., 33 (9) 2012
wayalan / HCPexAn extended Human Connectome Project multimodal parcellation atlas of the human cortex and subcortical areas
etw11 / DunedinPACNICode to estimate DunedinPACNI scores from FreeSurfer parcellations of brain MRI data.
dama-lab / MasmatMulti Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
OishiLab / OpenMAP T1Whole Brain Segmentation and Parecllation Using OpenMAP-T1 Method for 3D T1 Brain MRI
fepegar / SlicerParcellation3D Slicer modules for brain segmentation using deep learning.
SCAN-NRAD / DL DiReCTDL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation
tractor / TractorMagnetic resonance imaging and tractography with R
miykael / Parcellation FragmenterFragments FreeSurfer parcellation annotation in N-equal sized parcels
AkiNikolaidis / PyBASCBootstrapped Analysis of Stable Clusters- A semi-automated fMRI individual and group level functional parcellation technique
SlicerDMRI / SupWMA[MedIA 2023] "Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populations and dMRI Acquisitions", Medical Image Analysis
Pulkit-Khandelwal / Purple MriPenn Utilities for Registration and ParcelLation of Ex vivo MRI
dfsp-spirit / FreesurferformatsGNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.
canlab / Canlab MKDA MetaAnalysisCoordinate-based meta-analysis for neuroimaging using Multilevel Kernel Density Analysis and various other statistical tools (chi-square, clustering, correspondence analysis, parcellation)
RafaelRomeroGarcia / SubParcellationSubdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, Cantero JL (2012). Effects of network resolution on topological properties of human neocortex, Neuroimage, 59: 3522-3532
neuronets / KwykKnowing what you know - Bayesian brain parcellation
