56 skills found · Page 1 of 2
ncbi / DatasetsNCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
pirovc / Ganonganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
FOI-Bioinformatics / FlextaxdFlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
frankMusacchia / AnnocriptAnnocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts. Like our facebook page to be always updated: https://www.facebook.com/annocript
ktmeaton / NCBImetaEfficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).
phac-nml / Refseq MasherMash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
skoval / RISmedRISmed is an R package for downloading and analyzing data from the NCBI databases
tlatkowski / Deep Learning Gene ExpressionDeep learning methods for feature selection in gene expression autism data.
yeban / Ncbi Blast DbsFast download BLAST databases from NCBI.
xinyu-dev / IgblastDetailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
jordibc / EntrezA simple Python interface to the NCBI databases (Entrez).
Joseph7e / Assign Taxonomy With BLASTAssign taxonomy with blast, can be used for qiime
mlangill / MicrobeDBProvides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
Arcadia-Science / 2023 Nr ClusteringClustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
voorloopnul / PipetaxonPipeTaxon exposes the ncbi taxonomy database as a REST API.
StuntsPT / NCBI Mass DownloaderA program to download large amounts of sequences from NCBI databases.
guyleonard / Taxdump Edit:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files
ltnetcase / BedAnnoAnnotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104
allielarocco / Microarray AnalysisMicroarray Analysis Pipeline in Python
HobnobMancer / Cazy WebscraperWeb scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
