26 skills found
mitoNGS / MToolBoxA bioinformatics pipeline to analyze mtDNA from NGS data
seppinho / Haplogrep CmdHaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
seppinho / MutservemtDNA Variant Caller
terrimporter / CO1ClassifierThis repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
genepi / Haplogrep3Free mtDNA Haplogroup Classification Service
genepi / Mtdna Server 2mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes
viromelab / TracespipeReconstruction and analysis of viral and host genomes at multi-organ level
svohr / MixemtA tool for phylogenetic interpretation of human mtDNA sequence mixtures
sankaranlab / Mito GenotypingRepo for scripts for Ludwig et al mtDNA genotyping
mpieva / QuicksandA pipeline for the analysis of sedimentary ancient mtDNA.
alinja / SnipsaTools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.
mnievesc / Ancient MtDNA PipelineAnalysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
larryns / MitoScapeA big-data, machine-learning workflow for aligning mtDNA from NGS data.
HSGU-NIA / MitoAnalyzerSoftware for analyzing mtDNA single nucleotide variants and copy number variation
mitobench / MitoBenchThe mitochondrial workbench
GrassmannLab / MT UKBScripts to compute mtDNA abundance in the UK Biobank. Requires MoChA
mnievesc / ENAH Curso ADNA 2019This repository contains practical data analyses exercises for the special course on Paleogenomics and Anthropology held at the National School of Anthropology of Mexico (ENAH), May 6 to 10, 2019. Topics include performing QC on aDNA NGS data, assigning mtDNA haplogroups and testing hypotheses w/PCA and ADMIXTURE analyses. No previous command-line experience needed.
reznik-lab / Mtdna Mutationsscripts to generate figures/tables from Gorelick et al. Nat Metab, 2021
dongzhang0725 / Python MtDNANo description available
jisong-an / MtDNA MosaicismNo description available
