Results for "msprime"

9 skills found

Simulate ARGs and genomic sequence data using population genetic models

A set of tutorials for msprime and tskit.

Genotype likelihood simulator for VCF/BCF files

Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps around msprime.

Comparisons of simulators for the msprime paper

common models of human demography, implemented in Python with msprime

Publication describing msprime 1.0

Example of tracking the ARG during forward simulations. Implementation is a Python package using fwdpp, fwdpy11, msprime, and pybind11.

This is the starting code for endcoding an msprime TreeSequence Object into a 3D array for ML and visualization purposes