383 skills found · Page 1 of 13
jts / NanopolishSignal-level algorithms for MinION data
FelixKrueger / BismarkA tool to map bisulfite converted sequence reads and determine cytosine methylation states
nanoporetech / ModkitA bioinformatics tool for working with modified bases
al2na / MethylKitR package for DNA methylation analysis
nf-core / MethylseqMethylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
nanoporetech / RemoraMethylation/modified base calling separated from basecalling.
nloyfer / Wgbs Toolstools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
dpryan79 / MethylDackelA (mostly) universal methylation extractor for BS-seq experiments.
adamewing / MethylartistTools for plotting methylation data in various ways
hasindu2008 / F5cUltra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
cangermueller / DeepcpgDeep neural networks for predicting CpG methylation
yupenghe / MethylpyWGBS/NOMe-seq Data Processing & Differential Methylation Analysis
tjhwangxiong / TCGAplotA number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
bioinfomaticsCSU / DeepsignalDetecting methylation using signal-level features from Nanopore sequencing reads
wdecoster / MethplotlibPlotting tools for nanopore methylation data
crazyhottommy / DNA Methylation AnalysisDNA methylation analysis notes from Ming Tang
PengNi / CcsmethDetecting DNA methylation from PacBio CCS reads
MeHelmy / PrincessNo description available
zwdzwd / Sesame🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
comprna / METEOREAutomatic DNA methylation detection from nanopore tools and their consensus model
