39 skills found · Page 1 of 2
aristoteleo / Dynamo ReleaseInclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
opencobra / CobratoolboxThe COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
jotech / GapseqInformed prediction and analysis of bacterial metabolic pathways and genome-scale networks
cdanielmachado / CarvemeCarveMe: genome-scale metabolic model reconstruction
SysBioChalmers / DLKcatDeep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction
opencobra / Memotememote – the genome-scale metabolic model test suite
SysBioChalmers / RAVENThe RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
cnapy-org / CNApyAn integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
Matteopaluh / KEMETKEGG Module Evaluation Tool
raeslab / Omixer RpmA Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
resendislab / CordaAn implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
VirtualMetabolicHuman / AGORAThe aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gut microbes through the use of issues. Please note that pull requests will be automatically closed.
esaskar / CoReCoComputational method for Comparative ReConstruction of genome-scale metabolic networks
opencobra / MedusaAnalysis of ensembles of metabolic network reconstructions
tamascogustavo / ChimeraChimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.
raeslab / GMMsA manually curated database of human gut metabolic modules.
Waschina / CobrarCOnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
draeger-lab / PymCADREpymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.
omixer / Omixer RpmRAn R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
rcolpo / Pgp ReconstructionPathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models
