GMMs

A manually curated database of human gut metabolic modules, based on extensive literature review, as described in Vieira-Silva et al. 2016

Format

Module reactions are listed following their order in the module. Tab-separated reactions indicate alternative reactions (OR operation), while return- and comma-separated reactions are all required for process completeness (AND operation).

Mapping

For mapping metagenomic profiles onto the GMMs database please refer to our reference pathways mapper Omixer-RPM.

License

Academic Non-commercial Software License Agreement

Related publications and versioning

For the Vieira-Silva et al. 2016 paper, we used version 1.07 (8cf60cc735) of this repository.