14 skills found
ZhuangLab / MERFISH AnalysisMatlab software for the analysis of MERFISH data and the construction of MERFISH probes.
HaojiaWu / CellScopes.jlA Julia package for single cell and spatial data analysis
emanuega / MERlinMERlin is an extensible analysis pipeline applied to decoding MERFISH data
abbasilab / CelltransformerTransformer based region discovery in spatial transcriptomics (but mostly MERFISH) datasets
merfishtools / MerfishtoolsMERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provide Bayesian mechanisms for differential expression analysis.
ankitbioinfo / Nico TutorialA package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and statistically enriched covariation of gene programs between interacting cell types from the neighborhood.
ZhuangLab / Whole Mouse Brain MERFISH Atlas Scripts 2023No description available
QI2lab / Merfish3d AnalysisGPU accelerated post-processing for 2D or 3D imaging spatial transcriptomics data.
lhqing / MerfishingCode for MERFISH analysis
RCHENLAB / SpatialMmMERFISHNo description available
ChiLab-UCSD / Heart MERFISH AnalysisNo description available
czbiohub-sf / MERFISH Mouse ComparisonFigure notebooks for "Comparative analysis of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing"
xingjiepan / MERFISH Probe DesignA python3 pipeline for MERFISH probe design.
yinan-wan0 / WeMERFISHNo description available
