46 skills found · Page 1 of 2
saeyslab / NichenetrNicheNet: predict active ligand-target links between interacting cells
ventolab / CellphoneDBCellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
saezlab / Liana PyLIANA+: an all-in-one framework for cell-cell communication
saezlab / LianaLIANA: a LIgand-receptor ANalysis frAmework
saeyslab / MultinichenetrMultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
LewisLabUCSD / Ligand Receptor PairsCompendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
jssweller / DrugHIVEDrugHIVE: Structure-based drug design with a deep hierarchical generative model
ShellyCoder / Cellcallinferring cell-cell communication from scRNA-seq of ligand-receptor
CostaLab / CrossTalkeRR package to do the Ligand Receptor Analysis Visualization
HaCTang / SiteAF3a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various receptor-ligand type combinations.
ZJUFanLab / CellTalkDBA manually curated database of literature-supported ligand-receptor interactions in human and mouse
durrantlab / DeepfragDeepFrag is a deep convolutional neural network that guides ligand optimization by extending a ligand with a molecular fragment, such that the resulting extension is also highly complementary to the receptor. The DeepFrag web application is also a useful tool for teaching students about medicinal chemistry and lead optimization.
cansyl / MDeePredMulti-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery
Hypercubed / ConnectomeWeb tool for exploring cell-cell ligand-receptor mediated communication networks
ati-lz / ISCHIAFramework for analysis of cell-types and Ligand-Receptor cooccurrences
Elisseeff-Lab / DominoA software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware that an improved package, dominoSignal, is available.
genecell / LARISLARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics
futureomics / EasyDockVinaEasyDockVina is a free tool to perform for receptor with multiple (batch) ligand docking with AutoDockVina.
JonETJakobsson / ScConnectpackage for analysis of ligand and receptor connectivity between populations in scRNA-seq data
sahakyanhk / IPBSAiPBSA minimizes docked receptor-ligand conformations in implicit solvent and calculates the binding free energy with MM/PB(GB)SA methods. The algorithm is based on a freely available AmberTools18 which can be easily installed via conda
