98 skills found · Page 1 of 4
nf-core / RnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
deweylab / RSEMRSEM: accurate quantification of gene and isoform expression from RNA-Seq data
mskcc / Vcf2mafConvert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
BrooksLabUCSC / FlairFull-Length Alternative Isoform analysis of RNA
PacificBiosciences / IsoSeqIso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
alyssafrazee / BallgownBioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
yarden / MISOMISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
kingsfordgroup / SailfishRapid Mapping-based Isoform Quantification from RNA-Seq Reads
kvittingseerup / IsoformSwitchAnalyzeRAn R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
eturro / MmseqHaplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
gaolabtools / ScNanoGPSSingle cell Nanopore sequencing data for Genotype and Phenotype
VCCRI / SierraDiscover differential transcript usage from polyA-captured single cell RNA-seq data
sheynkman-lab / Long Read ProteogenomicsA workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
noush-joglekar / Scisorseqrscisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions
huangyh09 / BrieBRIE: Bayesian Regression for Isoform Estimate in Single Cells
WGLab / LIQALong-read Isoform Quantification and Analysis
Genentech / IsoscelesThe Isoforms from Single-Cell; Long-read Expression Suite
Oshlack / MINTIEMethod for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Augroup / MiniQuantImproving gene isoform quantification with miniQuant
luciorq / IsoformicIsoform-level functional RNA-Seq analysis 🧬
