46 skills found · Page 1 of 2
aertslab / ArboretoA scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
buenrostrolab / FigRFunctional Inference of Gene Regulation
kundajelab / ChromDragoNNCode for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
rargelaguet / Mouse Organogenesis 10x Multiome PublicationCode to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
Danko-Lab / DREGDetecting Regulatory Elements using GRO-seq and PRO-seq
asntech / PyjasparpyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
cantinilab / CirceCo-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
SunXQlab / ScMLnetSingle-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
Teichlab / Snp2cellcell type specific, trait-associated gene regulation
de-Boer-Lab / CisRegModelsScripts for building computational models of gene regulation with tensorflow
QData / AttentiveChromeNeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin
lingfeiwang / FindrFast Inference of Networks from Directed Regulations
JoeZhouWenxuan / Self Regulation Employing A Generative Adversarial Network To Improve Event Detectionevent detection
wassermanlab / JASPAR UCSC TracksCode and data used to create the JASPAR UCSC Genome Browser tracks data hub
Philyzh8 / ScMGCA"Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nature Communications 2023
markziemann / MitchAn R package for multi-dimensional pathway enrichment analysis
reisalex / SynBioMTSAn automated model test system for synthetic biology models of gene expression and regulation.
BrentLab / NetProphet 2.0A “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
molgenis / 1M CellsThis is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression regulation in immune cells” paper (https://doi.org/10.1038/s41467-022-30893-5)
JChander / DeepRIGA deep model infers gene regulation networks from scRNA-seq data.
