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nipreps / FmriprepfMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
andrewjahn / AndysBrainBookThis repository contains the files that generate Andy's Brain Book on ReadTheDocs.
DCAN-Labs / Abcd Hcp Pipelinebids application for processing functional MRI data, robust to scanner, acquisition and age variability.
CoBrALab / RABIESfMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
NathanKlineInstitute / NATVIEW EEGFMRICode for preprocessing data for the Naturalistic viewing EEG FMRI data release from NKI
adiengineer / ADHD Classification DBN ExtractionGuide : Prof Sundaram Suresh (NTU- Singapore) Area: Deep learning neural networks for feature extraction in high dimensional neuro imaging data. Tools used: Standard neuro imaging software for preprocessing, a MATLAB deep learning toolbox DeeBNet. I used deep learning algorithms including RBM’s and CNN’s to train on an open source MRI data set and classify unseen fMRI scans as having ADHD or not. I was able to achieve accuracy scores of 64% which is incrementally better than the current start of art(as of 2016). The project was challenging due to the high dimensionality of the input data and the meager number of test samples.
nmningmei / Preprocessing PipelinesPreprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data
karnigili / Computational NeuroscienceUsing computational tools to explore the networks underlying cognitive neuroscience
nipreps / Fmripost AromaRun ICA-AROMA on fMRIPrep derivatives
LTU-Machine-Learning / Inner Speech EEG FMRIThis repository contains the code used to preprocess the EEG and fMRI data along with the stimulation protocols used to generate the Bimodal Inner Speech dataset.
wagner-lab / Spm12wSpm12w is a set of tools and scripts to automate various aspects of fMRI preprocessing and GLM analysis in SPM12.
gallantlab / RealtimefmriReal-time collection, preprocessing, and analysis of fMRI data in Python
saigerutherford / Fetal CodeAutomated Preprocessing Pipeline for Fetal Resting-State fMRI Data
sjburwell / Fmriprep DenoisingScripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-dependence, and temporal degree of freedom loss.
phildean / SPM FMRI Example PipelineExample pipeline for preprocessing, reading in behavioural files, first level and second level analysis
weikanggong / Resting State FMRI PreprocessingA Matlab-based software package for preprocessing the resting-state fMRI data
lab-lab / NndbAnalysis scripts and movie annotations for NNDb
tsalo / Misc Fmri CodeJust small functions for preprocessing, analysis, etc. of fMRI data.
CCN-github / FMRI Preprocessing SPM12This is a SPM12 batch script that runs a standard fMRI preprocessing pipeline on a BIDS formatted data-set.
elliohow / FMRI ROI Analysis ToolAn analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
