320 skills found · Page 1 of 11
OpenGene / FastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
FelixKrueger / TrimGaloreA wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
bactopia / BactopiaA flexible pipeline for complete analysis of bacterial genomes
rpetit3 / Fastq DlDownload FASTQ files from SRA or ENA repositories.
rvalieris / Parallel Fastq Dumpparallel fastq-dump wrapper
najoshi / SickleWindowed Adaptive Trimming for fastq files using quality
OpenGene / AfterQCAutomatic Filtering, Trimming, Error Removing and Quality Control for fastq data
agordon / Fastx ToolkitFASTA/FASTQ pre-processing programs
nf-core / FetchngsPipeline to fetch metadata and raw FastQ files from public databases
divonlan / GenozipA modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
fastqe / FastqeFASTQ sequence quality visualisation with Emoji
OpenGene / MutScanDetect and visualize target mutations by scanning FastQ files directly
linsalrob / Fastq PairMatch up paired end fastq files quickly and efficiently.
shubhamchandak94 / SpringFASTQ compression
OpenGene / RepaqA fast lossless FASTQ compressor with ultra-high compression ratio
alastair-droop / FqtoolsAn efficient FASTQ manipulation suite
henrygd / QueueTiny async queue with concurrency control. Like p-limit or fastq, but smaller and faster.
signalbash / How Are We Stranded HereCheck strandedness of RNA-Seq fastq files
sanger-pathogens / Assembly StatsGet assembly statistics from FASTA and FASTQ files
dcjones / Fastq ToolsSmall utilities for working with fastq sequence files.
