21 skills found
epiverse-trace / SivirepData Wrangling and Automated Reports from 'SIVIGILA' source
epiverse-trace / EpiparameterR package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases
epiverse-trace / SerofoiEstimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
epiverse-trace / EpidemicsA library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
epiverse-trace / VaccineffR package with tools for estimating vaccine effectiveness and vaccine related metrics
epiverse-trace / FinalsizeR package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility
epiverse-trace / CfrR package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
epiverse-trace / EpiCoR package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia
epiverse-trace / CleanepiR package to clean and standardize epidemiological data
epiverse-trace / LinelistR package for handling linelist data
epiverse-trace / SimulistAn R package for simulating line lists
epiforecasts / Bpmodels[RETIRED. Use the epichains package instead]. Methods for simulating and analysing the sizes and lengths of chains from branching process models
epiverse-trace / PackagetemplateTemplate of an R package with standard Epiverse-TRACE automation
epiverse-trace / ReadepiAn R package for importing epi data into R.
epiverse-trace / Epiverse Trace.github.ioTechnical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally
jhhung / EpiVerseEpiVerse is an innovative three-stage pipeline designed to impute chromatin structures across various cell types. By enabling cross cell-type Hi-C imputations, EpiVerse facilitates unique "epigenome-level" perturbational Hi-C experiments, offering valuable insights into chromatin architecture dynamics under diverse epigenetic conditions.
epiverse-trace / Tutorials EarlyTutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.
epiverse-trace / SuperspreadingEstimation of individual-level variation in transmission
Starlitnightly / EpiverseEpiverse is the fundamental package for single cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) with Python.
epiverse-trace / Epiverse Trace.r Universe.devR-universe for the epiverse-trace GitHub organisation
