Epiverse is the fundamental package for single cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) with Python. This package is in development, and is not yet ready for use.

Directory structure

.
├── epiverse                  # Main Python package
├── epiverse_guide            # Documentation files
├── LICENSE
└── README.md

Where to get it

Epiverse can be installed via pypi and you need to install epiverse at first. Please refer to the installation tutorial for more detailed installation steps and adaptations for different platforms (Windows, Linux or Mac OS).

You can use pip install -U epiverse for installation.

Usage

Please checkout the documentations and tutorials at epiverse.readthedocs.io.

Reference

[1] Scanpy was originally published in Genome biology
[1] Episcanpy was originally published in Nature Communications
[1] SnapATAC2 was originally published in biorxiv

Contact

Lei Hu (1157269262@qq.com, or hulei@westlake.edu.cn)
Zehua Zeng (starlitnightly@163.com or zehuazeng@xs.ustb.edu.cn)

Other

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Epiverse

Install / Use