180 skills found · Page 1 of 6
google / DeepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
etal / CnvkitCopy number variant detection from targeted DNA sequencing
BenLangmead / Ads1 NotebooksCopies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
BenLangmead / Ads1 SlidesSlides for Algorithms for DNA Sequencing Coursera class
broadinstitute / IchorCNAEstimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
VerisimilitudeX / DNAnalyzerPrecision genomics for everyone, everywhere. Powered by private AI.
crazyhottommy / DNA Seq AnalysisDNA sequencing analysis notes from Ming Tang
Illumina / CanvasCanvas - Copy number variant (CNV) calling from DNA sequencing data
robertaboukhalil / Fastq.bioAn interactive web tool for quality control of DNA sequencing data
ygidtu / Trackplottrackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
xuwd11 / Coursera BioinformaticsMy solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Finding Mutations in DNA and Proteins; Bioinformatics Capstone: Big Data in Biology)
bioinformatics-centre / BayesTyperA method for variant graph genotyping based on exact alignment of k-mers
BGI-shenzhen / ReseqtoolsA Toolkit for analyzing next-generation DNA Re-Sequencing data
vplagnol / ExomeDepthExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
XWangLabTHU / CfDNApipecfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
raphael-group / THetATumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This repository includes the updated algorithm, called THetA2.
fanglab / Nanodisconanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
smithlabcode / MethpipeA pipeline for analyzing DNA methylation data from bisulfite sequencing.
sebhtml / RayRay -- Parallel genome assemblies for parallel DNA sequencing
DNArchery / DNArcheryA free and open-source DNA Sequencing/Visualization software for bioinformatics research.
