18 skills found
hariszaf / PemaPEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes
TillMacher / TaxonTableToolsTaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
HullUni-bioinformatics / MetaBEATMetabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
DominikBuchner / ApscaleAdvanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
genner-lab / Meta Fish LibA generalised, dynamic DNA reference library for metabarcoding of fishes
metabaRfactory / MetabaRmetabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
bensutherland / EDNA MetabarcodingPipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
yoann-dufresne / SLIMA web app for environmental DNA metabarcoding analysis
krabberod / BIO9905MERG1 V21BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)
apallavicini / PLANiTSPLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding
jun-inoue / PhyloBARCODERA web tool for species identification of metabarcoding DNA sequences by estimating phylogenetic trees.
TillMacher / Apscale GuiAdvanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
HullUni-bioinformatics / Haenfling Et Al 2016Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
TillMacher / TaxonTableTools2TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
letizialamperti / DLeDNANew variational autoencoders and deep metric learning based methods improve the dimensionality reduction of environmental DNA metabarcoding data
f-heeger / Long Read MetabarcodingPipeline for analysis of long DNA reads (in this case PacBio) for fungi metabarcoding using SSU, ITS and LSU as marker region
astanabe / ClaidentA high-throughput analysis pipeline for metabarcoding and DNA barcoding studies
AnneSoBen / Obitools WorkflowA snakemake workflow based on the obitools suite of programs, that analyzes DNA metabarcoding data.
