12 skills found
PatrickKueck / FASconCAT GFASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. The main options include sequence renaming, file format conversion, sequence translation, consensus generation of predefined sequence blocks, and RY coding as well as site exclusions in nucleotide sequences. FASconCAT-G implemented process options can be invoked in any combination and performed during a single process run. FASconCAT-G can also read in and handle different file formats (FASTA, CLUSTAL, and PHYLIP) in a single run.
desmid / MviewMView extracts and reformats the results of a sequence database search or multiple alignment.
benchling / Clustalo PythonA Python wrapper around Clustal Omega (http://www.clustal.org/omega/)
GSLBiotech / Clustal OmegaMultiple sequence aligner for protein and DNA/RNA.
NAL-i5K / Genomics WorkspaceDjango website project for common sequence search tools.
coldfunction / CUDA ClustalWA sequence alignment tool
orangeSi / Pymsaploterplot Multiple Sequence Alignment(MSA) of Clustal by python package
Ahmedhany750 / Phylogenetic Analysis And Protein Sequence Alignment PipelineA Python pipeline for protein sequence alignment and phylogenetic analysis using Biopython and Clustal Omega. Includes distance matrix calculation, UPGMA & NJ tree construction, custom node labeling, and enhanced tree visualizations. Outputs aligned sequences, trees in Newick format, and styled images.
hybsearch / ClustaloA clone of http://www.clustal.org/omega
PatrickKueck / FASconCATFASconCAT is a user-friendly software that concatenates rapidly different kinds of sequence data into one supermatrix file. Output files are either in FASTA, PHYLIP or NEXUS format and are directly loadable in phylogenetic programs like PAUP*, RAxML or MrBayes. FASconCAT can handle FASTA, PHYLIP and CLUSTAL formatted input files in one single run. It provides useful information about each input file and the concatenated supermatrix.
eggzilla / ClustalParserParse output of Clustal tools
sochix / Parallel Clustalw2ClustalW2: parallel implementation
