82 skills found · Page 1 of 3
jaxleyverse / JaxleyDifferentiable neuron simulations with biophysical detail on CPU, GPU, or TPU.
jonescompneurolab / HnnThe Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.
mrke / NicheMapRR implementation of Niche Mapper software for biophysical modelling
aqlaboratory / HsmCode associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
gitter-lab / MetlMutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models
ShenLab / SeqDancecode for SeqDance/ESMDance, biophysics-informed protein language models
NeuralEnsemble / NeuroConstructneuroConstruct: biophysically detailed neuronal modelling in 3D
IPL-UV / Ee BioNetThe Google Earth Engine implementation of the BioNet algorithm to estimate biophysical parameters along with their uncertainties.
bouralab / Prop3DA protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cleaned" domain structure in CATH.
jkriege2 / QuickFit3A data evaluation package for (imaging) fluorescnece correlation spectroscopy and other biophysical methods
facebookresearch / BioSkinInference of biophysical skin properties from RGB reflectance, with spectral upsampling from 380 to 1000 nm. An interactive viewer and editor is provided, alongside several practical applications.
VEZY / PlantBiophysics.jlA Julia package for computing processes related to plant ecophysiology and biophysics
mglerner / IntroToBiophysicsIntroduction to Biophysics, requires one semester of calculus-based Physics.
SchniedersLab / ForcefieldxForce Field X - Software for Molecular Biophysics
jbferet / ProspectR package for the simulation of leaf optical properties based on their biochemical and biophysical properties using the PROSPECT leaf model. A tutorial can be found on the gitlab website
prescient-design / Holo BenchBenchmark for Biophysical Sequence Optimization Algorithms
ollinevalainen / SatellitetoolsGet Sentinel-2 data from Google Earth Engine or from cloud-optimized geotiffs in AWS Open data registry maintained by Element84, and compute biophysical parameters using SNAP Biophysical processor algorithm.
flatironinstitute / ALENSa Living ENsemble Simulator -- a lens to help you watch biophysics
simonguld / CellSegmentationTrackerA Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
SlicerCBM / SlicerCBMComputational Biophysics for Medicine in 3D Slicer
