28 skills found
COMBINE-lab / Alevin Fry🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
ucagenomix / SiceloreSingle Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
pachterlab / SircelIdentify cell barcodes from single-cell genomics sequencing experiments
vpc-ccg / CalibCalib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
KleistLab / WarpDemuXdirect RNA nanopore sequencing barcode design and demultiplexing
xuchang116 / SmCountersmCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller", BMC Genomics, 2017 18:5. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3425-4
oicr-gsi / DebarcerDebarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
aaronmck / SC GESTALTGESTALT processing pipeline for barcodes captured with single-cell RNA sequencing
ws6 / Deindexeran easy deindex tool for illumina multiple barcodes sequencing
biocodellc / Biocode LimsThe Biocode LIMS plugin integrates Geneious with your lab workflow, allowing you to track processes through tissue sample, extraction, PCR, sequencing and assembly. It is best suited for large scale DNA barcoding efforts.
WGLab / AmpBinnerA barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
CycloneSEQ-Bioinformatics / CitrusCitrus: this tool is designed to efficiently split barcodes from sequencing data. It streamlines the preprocessing of genomic data by separating barcodes, enhancing the accuracy of downstream analyses.
Roco-scientist / NGS Barcode CountCounts barcodes within next generation sequencing data. DNA encoded libraries (DEL), CRISPR, and barcode-seq
lzamparo / DNAbarcodesSimple generator of DNA barcodes for sequencing experiments
YamamotoLabUCSF / SampleSheetCreate an Illumina Sample Sheet, the comma-separated text document required by Illumina sequencing systems to specify (1) sequencing parameters and (2) sample-barcode relationships. Customize [Header], [Reads], and [Data] sections; in particular, draw on up to 192 8-bp barcodes (96x i7 & 96x i5 indices) to specify up to 9,216 sample-barcode relationships for multiplexed amplicon sequencing.
ttmgr / Air MetagenomicsThis repository focuses on the metagenomic analysis of bioaerosols using nanopore sequencing. It highlights our use of nanopore's R10 chemistry for its high accuracy and throughput, alongside the Rapid Barcoding Kit 114 for streamlined sample preparation.
dgrtwo / BarNoneMatch barcodes in sequencing data based on Levenshtein distance
comery / HIFI Barcode SE400A new approach to access COI barcode using high throughput Single-End 400 bp sequencing
NCBI-Hackathons / BarcSeekBarcSeek: A Flexible Barcode Partitioning Tool for Demultiplexing Genomic Sequencing Data
lcomai / Barcode GeneratorA program that generates barcodes for sequencing adapters
