93 skills found · Page 1 of 4
rrwick / Bandagea Bioinformatics Application for Navigating De novo Assembly Graphs Easily
ruanjue / Wtdbg2Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
dzerbino / VelvetShort read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829
cgroza / GraffiTEGraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
ratschlab / MetagraphScalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
gyorilab / IndraINDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
ekimb / Rust Mdbgminimizer-space de Bruijn graphs (mdBG) for whole genome assembly
hyperplane-lab / Generative 3D Part AssemblyGenerative 3D Part Assembly via Dynamic Graph Learning, NeurIPS 2020
neherlab / PangraphA bioinformatic toolkit to align genome assemblies into pangenome graphs
spacegraphcats / SpacegraphcatsIndexing & querying large assembly graphs -- in space, no one can hear you miao!
metagentools / GraphBin✨🧬 Refined binning of metagenomic contigs using assembly graphs
katerinakazantseva / StrainyGraph-based assembly phasing
BirolLab / NtJoin🔗Genome assembly scaffolder using minimizer graphs
almiheenko / AGBInteractive visualization of assembly graphs
Kazhuu / Asm2cfgPython command-line tool and GDB extension to view and save x86, ARM and objdump assembly files as control-flow graph (CFG) pdf files
Vini2 / Phables🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
lvrcek / GNNome AssemblyLearning to untangle genome assembly with graph neural networks.
metagentools / MetaCoAG🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
mrfarhadi / IDA PluginAn IDA Pro Plugin to extract Call Graphs and Control Flow Graphs from an assembly file written in Python.
hidva / As2cfgConstruct the CFG(Control Flow Graph) from intel assembly code
