Velvet
Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829
Install / Use
/learn @dzerbino/VelvetREADME
README.TXT
VELVET SOURCE March 28 2008 Daniel Zerbino
NOTE: The PDF manual in this directory contains all the information contained in this text file, plus much more!
SUMMARY * A/ REQUIREMENTS * B/ COMPILING INSTRUCTIONS * C/ WHERE IS THE MANUAL?
A/ REQUIREMENTS
Velvet should function on any standard 64bit Linux environment with
gcc. A good amount of physical memory (12GB to start with, more is no luxury) is recommended.
B/ COMPILING INSTRUCTIONS
Normally, with a GNU environment, just type:
make
For colorspace Velvet replace that command with
make color
Otherwise compile each *.c file separately, then execute the default instructions at the top of Makefile.
C/ WHERE IS THE MANUAL?
If you cannot find the PDF manual in the source directory (probably because you downloaded Velvet through git), you can simply compile it:
make doc
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