fastp-fastq-preprocessing
All-in-one FASTQ QC and adapter trimming. Auto-detects Illumina adapters, filters low-quality reads, corrects paired-end overlaps, emits HTML+JSON QC in one pass. 3-10x faster than Trim Galore/Trimmomatic. First step before STAR, BWA-MEM2, or Salmon.
Install / Use
npx skills add jaechang-hits/SciAgent-Skills --skill fastp-fastq-preprocessingInstalls into whichever agent you are using.
SKILL.md
Installable skill definition
Quality Score
Category
AutomationSupported Platforms
Tags
Our assessment of fastp-fastq-preprocessing
fastp-fastq-preprocessing scores 83/100 on our quality scale, 2241st of 2,867 Automation skills we index.
We have not analysed the SKILL.md file itself yet, so the content part of this score is an estimate until our crawler reaches it.
It has 367 GitHub stars, a meaningful sign that others use it.
Maintenance, license and trust
- The repository was last updated 37 days ago, so fastp-fastq-preprocessing is actively maintained.
- No license is declared. By default that means all rights are reserved: you can read it, but reusing or redistributing it is not clearly permitted. Ask the author before building on it commercially.
- Its trust signals score 88/100, with 1 caution from licensing, adoption, age or documentation. These come from repository metadata, not a code audit — read the skill file before letting an agent act on it.
fastp-fastq-preprocessing compared with similar skills
All 4 of these similar skills score higher than fastp-fastq-preprocessing; compare them before choosing.
| Skill | Score | Stars | Updated | Format |
|---|---|---|---|---|
| fastp-fastq-preprocessing (this skill)by jaechang-hits | 83 | 367 | 37d ago | SKILL.md |
| Agent-Reachby Panniantong | 100 | 91.2k | 19d ago | CLAUDE.md |
| Scraplingby D4Vinci | 100 | 85.7k | today | MCP Server |
| rufloby ruvnet | 100 | 73.9k | today | MCP Server |
| algorithmic-artby anthropics | 100 | 177.9k | 12d ago | SKILL.md |
Frequently asked questions
- How do I install fastp-fastq-preprocessing?
- Run
npx skills add jaechang-hits/SciAgent-Skills --skill fastp-fastq-preprocessing. The install tabs above show the steps for each supported agent. - Which AI agents does fastp-fastq-preprocessing work with?
- It is written for Universal, as a SKILL.md file. Other agents that read the same format can often use it too.
- Is fastp-fastq-preprocessing safe to use?
- It declares no license and scores 88/100 on trust signals. Skills are instructions an agent will follow, so read the file before installing it and do not approve commands you do not understand.
- Is fastp-fastq-preprocessing still maintained?
- The repository was last updated 37 days ago, so fastp-fastq-preprocessing is actively maintained.
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From repository metadata: license, adoption, age and documentation. Not a code audit — see the Safety scan above for what the skill file itself contains.