cellxgene-census
Query CELLxGENE Census (61M+ cells). Search by cell type/tissue/disease/organism; get AnnData, stream out-of-core, train PyTorch models. For your own data use scanpy; for annotated data use anndata.
Install / Use
npx skills add jaechang-hits/SciAgent-Skills --skill cellxgene-censusInstalls into whichever agent you are using.
SKILL.md
Installable skill definition
Quality Score
Category
AutomationSupported Platforms
Tags
Our assessment of cellxgene-census
cellxgene-census scores 83/100 on our quality scale, 2244th of 2,867 Automation skills we index.
We have not analysed the SKILL.md file itself yet, so the content part of this score is an estimate until our crawler reaches it.
It has 367 GitHub stars, a meaningful sign that others use it.
Maintenance, license and trust
- The repository was last updated 37 days ago, so cellxgene-census is actively maintained.
- No license is declared. By default that means all rights are reserved: you can read it, but reusing or redistributing it is not clearly permitted. Ask the author before building on it commercially.
- Its trust signals score 88/100, with 1 caution from licensing, adoption, age or documentation. These come from repository metadata, not a code audit — read the skill file before letting an agent act on it.
cellxgene-census compared with similar skills
All 4 of these similar skills score higher than cellxgene-census; compare them before choosing.
| Skill | Score | Stars | Updated | Format |
|---|---|---|---|---|
| cellxgene-census (this skill)by jaechang-hits | 83 | 367 | 37d ago | SKILL.md |
| Agent-Reachby Panniantong | 100 | 91.2k | 19d ago | CLAUDE.md |
| Scraplingby D4Vinci | 100 | 85.7k | today | MCP Server |
| rufloby ruvnet | 100 | 73.9k | today | MCP Server |
| algorithmic-artby anthropics | 100 | 177.9k | 12d ago | SKILL.md |
Frequently asked questions
- How do I install cellxgene-census?
- Run
npx skills add jaechang-hits/SciAgent-Skills --skill cellxgene-census. The install tabs above show the steps for each supported agent. - Which AI agents does cellxgene-census work with?
- It is written for Zed, as a SKILL.md file. Other agents that read the same format can often use it too.
- Is cellxgene-census safe to use?
- It declares no license and scores 88/100 on trust signals. Skills are instructions an agent will follow, so read the file before installing it and do not approve commands you do not understand.
- Is cellxgene-census still maintained?
- The repository was last updated 37 days ago, so cellxgene-census is actively maintained.
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Languages
Trust signals
From repository metadata: license, adoption, age and documentation. Not a code audit — see the Safety scan above for what the skill file itself contains.