Nanoforms
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
Install / Use
/learn @czmilanna/NanoformsREADME
Nanoforms
Minimal Requirements
Minimal Software Requirements
- Linux, recommended Ubuntu 20.04 LTS
- Docker
- docker-compose
- Make
Minimal Hardware Requirements
- Processor: 8 core 64bit
- Memory: 64GB RAM
- Disk Space: 1TB
Deployment
Step 1. Building images and deploying containers
Change CHANGE_ME secrets in docker-compose.env file and run below command:
sudo make deploy
Step 2. Admin User creation
Run below command:
sudo make create_super_user
Step 3. Accessing the Application
The application should be available at http://127.0.0.1:7337/
Removal
Run below command:
sudo make destroy
