GraphTGI
A graph attention-based embedding model for predicting TF-target gene interactions.
Install / Use
/learn @YanghanWu/GraphTGIREADME
GraphTGI
An graph attention-based model for predicting TF-target gene interactions. For details of the model, refer to this paper.
Overview
data/contains the necessary dataset files;main.pymain function for GraphTGI.
Requirment
The main requirements are:
- numpy==1.19.2
- mxnet-cu102==1.6.0.post0
- dgl-cu102==0.6.0.post1
useconda env create -f environment.yaml to set up the environment.
Cite
Please cite our paper if you use this code in your own work.
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