48 skills found · Page 1 of 2
nloyfer / Wgbs Toolstools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
yupenghe / MethylpyWGBS/NOMe-seq Data Processing & Differential Methylation Analysis
igordot / SnsAnalysis pipelines for genomic sequencing data
sajuukLyu / Protocols 4pubMulti-omics analysis protocols by Lyu.
ben-laufer / DMRichRA R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)
jlab-code / MethylStarA fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
ENCODE-DCC / Wgbs PipelineENCODE whole-genome bisulfite sequencing (WGBS) pipeline
heathsc / GemBSgemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).
GarrettJenkinson / InformMEAn information-theoretic pipeline for methylation analysis of WGBS data
ben-laufer / CpG MeA whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
aryeelab / Bisulfite Seq ToolsSuite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
hhg7 / DefiantDifferential methylation: Easy, Fast, Identification and ANnoTation
NIGMS / DNA Methylation Sequencing Analysis With WGBSIn this module, you will learn how to download raw sequence data, calculate differentially methylated regions, and run a canonical methyl-seq pipeline in Nextflow
DavidQuigley / WCDT WGBSWest Coast Dream Team Whole Genome Bisulfite Sequencing
itsvenu / ALPSAnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
benoukraflab / TFregulomeR OldTFregulomeR reveals transcription factors’ context-specific features and functions
twlab / MethylGrapherMethylation analysis pipeline for genome graph
kwdunaway / WGBS ToolsTools for working with WGBS data
lulizou / BoostmeR package to impute methylation within WGBS using machine learning
waterlandlab / CluBCpGCluster-based analysis of CpG methylation
