9 skills found
gustaveroussy / SopaTechnology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)
Sanofi-Public / Enact PipelineRepository for ENACT pipeline for end-to-end analysis of Visium HD data
bioinfocz / ScdrakeA pipeline for droplet-based single-cell RNA-seq and spot-based spatial transcriptomics data secondary analysis implemented in the drake Make-like pipeline toolkit for the R language.
alberto-valdeolivas / ST CRC CMSThis repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics technology
akinaka-dd / LUAD SpatialSpatial omics analysis of human LUAD by Visium and PhenoCycler
gustaveroussy / CFSR package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)
HuifangZJU / VisproVispro improves imaging analysis for Visium spatial transcriptomics
ourtheol / Spatial Transcriptomics Intro Compgen2025Intro to spatial omics analysis using the VoltRon and Seurat R packages on Visium and Xenium breast cancer tumor microenvironment datasets during the compgen2025 2nd module, taught by Artur Manukyan.
ltkagohara / HCC Cabonivo VisiumCode for HCC cabo/nivo clinical trial Visium analysis
