31 skills found · Page 1 of 2
joybio / MultiPrimemultiPrime is a mismatch-tolerant minimal primer set design tool for large and diverse sequences (e.g. Virus). Here is a web-based version (test: http://multiPrime.cn)
mtisza1 / Cenote Taker2Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
pathoplexus / PathoplexusAn open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.
xzx0554 / EVO2 VirusA deep learning model (EVO2-500M) for predicting host specificity of eukaryote-infecting viruses CDNA sequence
RK900 / Flu PredictionPredicting Future Influenza Virus Sequences with Machine Learning
Nardus / Zoonotic RankCode and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences".
Moeinh77 / Virus DNA Classification BERTClassification of 6 viruses including covid-19 based on their DNA sequences using Transformers
rcedgar / PalmdbDatabase of virus RdRP barcode sequences
salzberg-lab / BolotieSARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
congyulu-bioinfo / PHPProkaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). PHP takes the complete or partial genomic sequences of prokaryotic viruses as inputs. For each virus sequence, PHP automatically calculates the probability of host for 60,105 prokaryotic genomes and takes the prokaryotic genome with the largest probability as the predicted host. PHP would output the name of the prokaryotic genome with the largest score, and output the host score of all prokaryotic genomes.
Rayin-saber / IAV CNNA 2D convolutional neural network model to predict antigenic variants of influenza A virus through sequence data
reconhub / Phylo PracticalIntroduction to phylogenetics using R, using influenza virus sequences
hivdb / NucaminoA nucleotide to amino acid alignment program optimized for virus gene sequences.
ababaian / PalmdbDatabase of virus RdRp barcode sequences
phac-nml / Mpox NfA monkeypox virus (MPXV) assembly pipeline using Nextflow for host-removal, reference-based assembly, and generation of sequence quality metrics for Illumina paired-end data using a shotgun metagenomic sequencing approach.
flu-crew / FluminaA pipeline for the analysis of Illumina sequence data from Influenza viruses
mtisza1 / Cenote Unlimited BreadsticksDEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report
PaulKlinger / Freeform Virus BlinkyFreeform electronics sculpture of a SARS-CoV-2 virus that blinks it's own RNA sequence.
jbloomlab / Flu Single Cellclean analysis of infections with "pure" influenza virus sequenced on 10X Chromium
omics-lab / VirusTaxoVirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment
