67 skills found · Page 1 of 3
broadinstitute / PicardA set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
edgardomortiz / Vcf2phylipConvert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
BGI-shenzhen / PopLDdecayPopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
davetang / Learning Vcf FileLearning the Variant Call Format
EBIvariation / Vcf ValidatorValidation suite for Variant Call Format (VCF) files, implemented using C++11
AndersenLab / VCF KitVCF-kit: Assorted utilities for the variant call format
avibrazil / Digital Business CardAn effort to evolve the old paper business card into newer social formats as Passbook, HTML5+hCard, VCF
MRCIEU / GwasvcfReading, querying and writing GWAS summary data in VCF format
czbiohub-sf / CerebraA tool for fast and accurate summarizing of variant calling format (VCF) files
plantimals / 2vcfconvert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations
everestial / VCF SimplifyA python parser to simplify and build the VCF (Variant Call Format).
flalom / Vcf Reformatter🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format with intelligent transcript handling.
elimuinformatics / Vcf2fhirvcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
zeeev / MergeSVcallersheuristics to merge structural variant calls in VCF format.
opencb / Genome MapsAn open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.
zhanxw / CheckVCFSanity check Variant Call Format (VCF) files.
alimanfoo / VcfnpLoad numpy arrays and HDF5 files from VCF (variant call format)
hewm2008 / PopLDdecayPopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files
opencb-bigdata-viz / Genome MapsA new web-based HTML5 genome browser. Genome Maps can also browse BAM and VCFs files among other formats.
GMOD / Vcf JsVariant Call Format (VCF) parser
