43 skills found · Page 1 of 2
JacobBumgarner / VesselVioAn open-source application for the analysis and visualization of segmented vasculature datasets
vessap / VessapExperimental code and examples for: Automated analysis of whole brain vasculature using machine learning
BlueBrain / BioExplorerThe Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration
RUB-Bioinf / VesselExpress🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
braincharter / VasculatureRegion- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space
BlueBrain / VessMorphoVisA lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.
tascj / Kaggle Hubmap Hacking The Human VasculatureSolution of Kaggle competition: HuBMAP - Hacking the Human Vasculature
zs1314 / OCTAMamba【ICASSP2025 Oral】Offical Pytorch Code for "OCTAMamba: A State-Space Model Approach for Precision OCTA Vasculature Segmentation"
BlueBrain / UltraliserReconstruction of watertight meshes, annotated volumes and center line skeletons of neuroscience spatial structures from non-watertight inputs, segmented masks, skeletons of NGV morphologies and volumes.
psweens / V SystemA project to create synthetic vascular networks utilising L-Systems.
Connor323 / Eye Fundus Image SegmentationSegmentation vasculature in retinal image
petteriTeikari / VesselNN DatasetOpen-source volumetric brain vasculature dataset — 12 two-photon microscopy stacks with dense voxel-level segmentation labels
aim-lab / PVBMPython Vasculature Biomarker toolbox API
natalie11 / TUbeNetCNN for segmenting vasculature
visionlyx / HP VSPA high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution
Waelchli-lab / Single Cell Atlas Of The Human Brain Vasculature Accross Development Adulthood And DiseaseMolecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level
Nischaydnk / HubMap 2023 3rd Place SolutionWinning 3rd Place solution for HubMap - Hacking the Human Vasculature hosted on Kaggle
mutual-ai / Fundus Vessel Segmentation TmbeOne of the first steps in automatic fundus image analysis is the segmentation of the retinal vasculature, which provides valuable information related to several diseases. In this work, we present an extensive description and evaluation of our method for blood vessel segmentation in fundus images based on a discriminatively trained, fully connected conditional random field model. This task remains a challenge largely due to the desired structures being thin and elongated, a setting that performs particularly poorly using standard segmentation priors, such as a Potts model or total variation. We overcome this difficulty by using a conditional random field model with more expressive potentials, taking advantage of recent results enabling inference of fully connected models almost in real-time. Parameters of the method are learned automatically using a structured output support vector machine, a supervised technique widely used for structured prediction in a number of machine learning applications. The evaluation of our method is performed both quantitatively and qualitatively on DRIVE, STARE, CHASEDB1 and HRF, showing its ability to deal with different types of images and outperforming other techniques, trained using state of the art features.
petteriTeikari / TwoPhotonVesselsMATLAB analysis pipeline for two-photon microscopy vasculature — vessel tracing, diameter measurement, and 3D visualization
GonzaloMaso / VItAThe Virtual ITerative Angiogenesis library allows the generation of synthetic vasculatures mimicking the angiogenesis process. The models support the usage of in-vivo or experimental prior constraints over the geometrical description.
