9 skills found
bergmanlab / McclintockMeta-pipeline to identify transposable element insertions using next generation sequencing data
tk2 / RetroSeqRetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps.
adamewing / TebreakFind and characterise transposable element insertions
caixu0518 / ITIPsIdentification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data
bergmanlab / Ngs Te MapperSoftware for detecting transposable element insertions from next-generation sequencing data
bergmanlab / Ngs Te Mapper2Software for detecting transposable element insertions from next-generation sequencing data
jdaron / EpiTEomeSimultaneous Detection of Transposable Element Insertion Sites and their DNA Methylation Levels from Plant Genomes
VistaSohrab / TEfinderA bioinformatics tool for detecting novel transposable element insertions
simonorozcoarias / TIP FinderTIP_finder: Transposable element Insertion Polymorphism Finder for huge genomic datasets
